Journal of Open Source Science
Menu

pmid:40951359 Public

https://scm.piranha.sh/git/ada56728063306072cb24f17/sci-pmid-40951359 · at f33408f8aebe

Claudin18.2 defines a prognostically distinct subgroup of intrahepatic cholangiocarcinoma via CD8+ T-cell exclusion.

pmid:40951359 · revision 2 · Frontiers in oncology

Original
2025
Created
2026-11-01
Ingested
2026-11-07
Paper record The research question, publication details and source material recorded for this paper.

This file carries no abstract.

DOI
10.3389/fonc.2025.1636367
PMID
40951359
Journal
Frontiers in oncology
Published
2025
Revision
2
Format version
1.0
Content hash
sha256:253486a70cb3fa8e7f70d7dba9652e49061645eb758f3dd18d190d1bd5b8391c

Recomputed from the file: it matches.

Opened from
pmid:40951359
Written
2026-11-01T10:25:53Z
Updated
2026-11-01T14:01:48Z
Made by
minimax, minimax_alt, Corpus assay engine
Source run
run-20261023T122449232913
Data sources The sources the file names, with the access and the state the file records for each one.

manuscript · open · resolved

10.3389/fonc.2025.1636367

https://doi.org/10.3389/fonc.2025.1636367

xml · sha256:dcb877d871ba2b34be8a8c832ec4e28918193a4d85570cb6f3d69ec264ad7b63

Source read by the package builder: full_text.

table · open · verified

section[8]/table-wrap[1]#T1

jats-table · 2,730 bytes · sha256:1aab42c1c72036f14bcc3225dfaaaa0f1733eae2b4607332fed0d3eb77230452

Clinicopathological characteristics and CLDN18.2 expression in ICC patients.

table · open · verified

section[11]/table-wrap[1]#T2

jats-table · 1,134 bytes · sha256:b5eb6e48f3679d227f8cf8f4736118d3f4e82b2c446866cf4e8156e23f7e7685

Univariate analysis of prognostic factors(OS) for ICC.

table · open · verified

section[11]/table-wrap[2]#T3

jats-table · 1,060 bytes · sha256:2a90d93ef13d5c831142a70f6defc9210d5d16a69362d23681f247dadf7a6830

Cox regression analyses of disease-free survival for ICC.

Reproducibility map Follow the research stages and see which inputs each stage needs and what state the file records for it.

the headline numerical result the paper states for its main finding

  1. 1

    Read the published estimate and its interval from the source

    The number a replication must land on, and the sentence it came from.

    in: source:pmid:40951359

    out: the published estimate, its unit and its interval

    complete

    other

  2. 2

    Obtain the source data behind the published result

    The published result cannot be recomputed without the data the paper analysed.

    out: the source data with its provenance

    blocked on data:not_downloaded

    blocked

    data-preparation

  3. 3

    Run the analysis programme

    Re-run the paper's analysis on the source data and produce the registered result. | SEP input not carried into the asset list: materials:the source data behind the published result in pmid:40951359

    out: the registered result

    blocked on no owned computational capability is bound to this experiment

    blocked

    analysis

Can this run here What the file says about running this experiment, and what still stands in the way.
State
partial · tier
Blocked on
nothing
The result not_run What has run against this file, and the review the file carries.

Runs

Nothing has run against this file

The file records no execution. It is the paper's own definition of its experiment, read and held by the journal.

Review carried by the file

partial

Reader
none named
Scope and limitations What this file does not cover, as the file itself states it.
  • abstract
  • asset:source:pmid:40951359 not verified
  • authors
  • capability
  • corpus_record_absent
  • execution.not_run
  • method
  • review.human_critique
  • review.machine_critique.blocked
  • step:obtain_source_data blocked on data:not_downloaded
  • step:run_analysis blocked on no owned computational capability is bound to this experiment
  • step:run_analysis input 'materials:the source data behind the published result in pmid:40951359' does not resolve to a declared asset
  • targets

experiment

  • step:obtain_source_data blocked on data:not_downloaded
  • step:run_analysis blocked on no owned computational capability is bound to this experiment
  • step:run_analysis input 'materials:the source data behind the published result in pmid:40951359' does not resolve to a declared asset

data

  • asset:source:pmid:40951359 not verified

analysis

  • method
  • targets

capability

  • capability

readiness

  • corpus_record_absent

review

  • review.human_critique
  • review.machine_critique.blocked

execution

  • execution.not_run
Forks opened from this paper Each fork is a repository of its own, with the paper it was opened from.

No fork has been opened from this paper yet.

Files

pmid:40951359.json 33,407 bytes